PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040911

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HSF

Protein Properties

Length: 459aa MW: 50636.9 Da PI: 5.719

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040911	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.4	1.3e-34	13	104	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+++ed+++++++sws+ nsfvv++ ef+k++Lpk+Fkhsnf+SFvRQLn+YgF+kv+ ++ eF+++ F +g+++ll++i Lus10040911 13 FLCKTYQMVEDPSTDSVVSWSSGDNSFVVWNVPEFQKQLLPKFFKHSNFSSFVRQLNTYGFRKVDPDR---------FEFANEGFLRGQRHLLKNIS 100 9***************************************************************99.........67**************** PP XXXX CS HSF_DNA-bind 99 rkks 102 rkk+ Lus10040911 101 RKKH 104 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.31E-34	8	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.0E-58	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.5E-37	9	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.8E-30	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.7E-19	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.7E-19	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.7E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MVDVAAGSTV PPFLCKTYQM VEDPSTDSVV SWSSGDNSFV VWNVPEFQKQ LLPKFFKHSN 60 FSSFVRQLNT YGFRKVDPDR FEFANEGFLR GQRHLLKNIS RKKHVQTQGT QLPQPQSSPA 120 TPPVQAGKLG VEEEVERLKR DKNVLMQELV RLRQQQTNTD NQLQTVGKRV QGMEQRQQQM 180 MSFLAKALQS PGIFGQFVQQ QNQNSRRIVG GTKKRRLPAH EGELLAGEIQ DSHDRQIVKF 240 HSSMNEAAKA MLRQILKINT TSSMLEQSMN NVGPFLISDV PASGAKLSRV SRASFLPSEP 300 GLPADNVPKT VSEVQPAPAS TDCTESNHLI NMDVSDSREE IGLPAFCEIG PKIPRPIPSE 360 SNVGAGAATA EGMTVEKSPN EDADHMEDGL PKLPDISDVF WEQFLSTSPL SGETNNGNPG 420 TVETGSSNGE EEKRWDKVEG MNYLTEQMGL LISESGIV*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MVDVAAGSTV PPFLCKTYQM VEDPSTDSVV SWSSGDNSFV VWNVPEFQKQ LLPKFFKHSN  60
FSSFVRQLNT YGFRKVDPDR FEFANEGFLR GQRHLLKNIS RKKHVQTQGT QLPQPQSSPA  120
TPPVQAGKLG VEEEVERLKR DKNVLMQELV RLRQQQTNTD NQLQTVGKRV QGMEQRQQQM  180
MSFLAKALQS PGIFGQFVQQ QNQNSRRIVG GTKKRRLPAH EGELLAGEIQ DSHDRQIVKF  240
HSSMNEAAKA MLRQILKINT TSSMLEQSMN NVGPFLISDV PASGAKLSRV SRASFLPSEP  300
GLPADNVPKT VSEVQPAPAS TDCTESNHLI NMDVSDSREE IGLPAFCEIG PKIPRPIPSE  360
SNVGAGAATA EGMTVEKSPN EDADHMEDGL PKLPDISDVF WEQFLSTSPL SGETNNGNPG  420
TVETGSSNGE EEKRWDKVEG MNYLTEQMGL LISESGIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-27	5	102	20	129	Heat shock factor protein 1
5d5v_B	8e-27	5	102	20	129	Heat shock factor protein 1
5d5v_D	8e-27	5	102	20	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040911

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021623526.1	1e-171	heat stress transcription factor A-1b
Swissprot	Q84T61	1e-131	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2C9VA84	1e-170	A0A2C9VA84_MANES; Uncharacterized protein
STRING	Lus10040911	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-116	heat shock factor 3

Link Out ? help Back to Top
Phytozome	Lus10040911

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]