PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041023
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 196aa    MW: 22434.3 Da    PI: 8.4639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr++  +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Lus10041023  7 RYRGVRQRQ-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69****999.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.54E-34666No hitNo description
PROSITE profilePS5103221.285764IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-21766IPR016177DNA-binding domain
PfamPF008476.5E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-34764IPR001471AP2/ERF domain
SMARTSM003802.3E-39770IPR001471AP2/ERF domain
PRINTSPR003672.7E-11819IPR001471AP2/ERF domain
PRINTSPR003672.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTRPQQRYRG VRQRQWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGQRAR  60
TNFPYNPSAH QSASSKLLSA NLVAKLQKCY MASLQMAEQA SFQQQQQQFE KSTAVHVVNN  120
AVKTEELGTY NDSSYSRPPP QKKRAVLVQQ QVEEAESNTV KKVQVESREQ LEEHHIEQMI  180
EELLHYGTIE LCPSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-18864663ATERF1
3gcc_A9e-18864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640829.13e-81ethylene-responsive transcription factor ERF003-like
RefseqXP_022730839.12e-81ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-66ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2C9W3I35e-78A0A2C9W3I3_MANES; Uncharacterized protein
STRINGLus100410231e-144(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-56ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]