PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041044
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 153aa    MW: 16238.8 Da    PI: 5.1976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15857154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ + e Aa a++ a  +l+
  Lus10041044  8 KKYKGVRRRK-WGKWVSEIRVP---G-SqDRLWLGSYSSSEAAAVAHDIAYYCLR 57
                 59*****998.**********8...4.35***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.97E-22872No hitNo description
SMARTSM003802.1E-22978IPR001471AP2/ERF domain
PfamPF008472.7E-8957IPR001471AP2/ERF domain
PROSITE profilePS5103220.481972IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15960IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-23972IPR001471AP2/ERF domain
PRINTSPR003676.1E-81021IPR001471AP2/ERF domain
PRINTSPR003676.1E-83248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSNSAGEKKY KGVRRRKWGK WVSEIRVPGS QDRLWLGSYS SSEAAAVAHD IAYYCLRRGD  60
SSSSAGKSYN FPLASLPTSV LQPDLSPKSV QRAASDAGMA VDAQLILQNS TSTASGGSGG  120
SEMWPETSWG GEDHGSGSWG EDVLDLSVED YL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441635.15e-50ethylene-responsive transcription factor ERF020
SwissprotQ9C9I81e-41ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2H5Q4M33e-49A0A2H5Q4M3_CITUN; Uncharacterized protein
STRINGLus100410441e-105(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.19e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]