PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041052
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 205aa    MW: 22143 Da    PI: 4.8711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041052genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-201867255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr++k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++aa+++l+g
  Lus10041052 18 RYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYATPEMAAAAYDAAALYLRG 67
                 7*******9.**********8...557*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-141867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-291878IPR001471AP2/ERF domain
CDDcd000186.94E-191879No hitNo description
PROSITE profilePS5103222.4841877IPR001471AP2/ERF domain
SMARTSM003805.7E-351883IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-191877IPR016177DNA-binding domain
PRINTSPR003671.8E-91930IPR001471AP2/ERF domain
PRINTSPR003671.8E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENCGIDDHG GAGAAARRYR GVRQRKWGKW VSEIREPGKK TRIWLGSYAT PEMAAAAYDA  60
AALYLRGVEG GAQLNFPELA HSLPRPASSS VEDVQTAAQQ AAALMMINRK PDPSPGGVEM  120
ATATGRFGLR PVRVGLSPSQ IQAINETPMD SPNMWMELAG EAVFLGSYYD AVPMALDGLV  180
IDGYDFSGLD EIMETHHQPS IWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-141482168ATERF1
3gcc_A2e-141482168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453102.13e-61ethylene-responsive transcription factor ERF022
SwissprotQ9LQ288e-42ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A2K2B1Y77e-60A0A2K2B1Y7_POPTR; Uncharacterized protein
STRINGLus100410521e-149(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-33ERF family protein