PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041088
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 228aa    MW: 26164.1 Da    PI: 6.1757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041088genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-13112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Lus10041088 112 PWTEAEHKLFLIGLSKYGKGDWRSISRNIVVSRTPTQVASHAQKY 156
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-5657IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-11863IPR009057Homeodomain-like
CDDcd001677.93E-41055No hitNo description
PROSITE profilePS500905.1221055IPR017877Myb-like domain
PROSITE profilePS5129420.466105161IPR017930Myb domain
SuperFamilySSF466891.35E-15106160IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-17108160IPR006447Myb domain, plants
SMARTSM007177.6E-10109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10109156IPR009057Homeodomain-like
CDDcd001672.12E-8112157No hitNo description
PfamPF002497.4E-11112156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYQEPYSDHW TRSDDKKFEQ ALVFFPEDSP DRWLNIAHHM RRPVAQVLEH YDLLLRDVYE  60
IDSGQVELPT YLDDDVDNWK SSVAVEEEDS GQISFAGGKT KHGETERKKG TPWTEAEHKL  120
FLIGLSKYGK GDWRSISRNI VVSRTPTQVA SHAQKYFLRQ ISVKKERKRS SIHDITNVDM  180
NAVSPCSLQG QNQMQQQEIS TLASSYLPDH HQQEGYLMGF NSSGFPM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041088
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468770.12e-82PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN63e-52SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3P6AJ621e-81A0A3P6AJ62_BRAOL; Uncharacterized protein
STRINGLus100410881e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-78MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]