PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041096
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 341aa    MW: 36782.8 Da    PI: 8.093
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041096genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-064693441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41
                   C++++++++   C + ++ lC++C   +H g          H++++
  Lus10041096 46 LLCERCSSQPALVRCAEEKVSLCQNCNWMGHGGgsssnsasssHKRQT 93
                 57************************9999955777778888887765 PP
2CCT62.61.3e-21283326144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RYkeK+ktRkFeK++rY+sRK++A+ R+RvKGrFvk+ 
  Lus10041096 283 RSNAVMRYKEKKKTRKFEKRVRYASRKERADVRKRVKGRFVKAG 326
                  899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.603147IPR000315B-box-type zinc finger
SMARTSM003365.5E-5447IPR000315B-box-type zinc finger
CDDcd000212.25E-6447No hitNo description
PfamPF062032.2E-16283325IPR010402CCT domain
PROSITE profilePS5101715.398283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGYICDFCGE QRSMVNCRSD AACLCLSCDR NVHAANALSK RHSRTLLCER CSSQPALVRC  60
AEEKVSLCQN CNWMGHGGGS SSNSASSSHK RQTINCYSGC PSASELSSIW SFVLDFPEAE  120
TSTMYEQGMG LMSIAENVAT NSWPSSNDNQ NQGGSNMTSR DVGKSSVWDN GSSLFGTKDM  180
SVADPSYHSG AAAEGSSAGR MNSMQQQQPT CSNAASADSI MSTKTEPAVC LTGRQLHSNL  240
SFSGVTGESS GGDYQDCGVS PMLLMGEPPW GSPCAEGSPS ANRSNAVMRY KEKKKTRKFE  300
KRVRYASRKE RADVRKRVKG RFVKAGETYD YDPLSQTRSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833267.11e-146PREDICTED: zinc finger protein CONSTANS-LIKE 10-like isoform X2
SwissprotQ9LUA91e-128COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2I4FNR81e-145A0A2I4FNR8_JUGRE; zinc finger protein CONSTANS-LIKE 10-like isoform X2
STRINGLus100410960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-108B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]