PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041126
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 851aa    MW: 94933 Da    PI: 7.6956
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041126genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.42.7e-44301323104
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k+rwl+++ei+aiL n + +++  ++ + pksg+++L++rk++r+frkDGy wkkk+dgkt++E+he+LKvg+ e +++yYah+e+n+tf rrcy
  Lus10041126  30 EEaKSRWLRPNEIHAILCNPKYFTVFVKPVNLPKSGTIVLFDRKMLRNFRKDGYRWKKKRDGKTIKEAHEHLKVGTEERIHVYYAHGEDNQTFVRRCY 127
                  4559********************************************************************************************** PP

         CG-1 100 wlLee 104
                  wlL++
  Lus10041126 128 WLLDK 132
                  ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143761.63325154IPR005559CG-1 DNA-binding domain
SMARTSM010762.6E-6028202IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-3831132IPR005559CG-1 DNA-binding domain
PfamPF018338.5E-5367453IPR002909IPT domain
SuperFamilySSF812963.5E-11368454IPR014756Immunoglobulin E-set
SuperFamilySSF525403.19E-8624723IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.595657683IPR000048IQ motif, EF-hand binding site
SMARTSM0001550672694IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.614673702IPR000048IQ motif, EF-hand binding site
SMARTSM000150.044695717IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.066696720IPR000048IQ motif, EF-hand binding site
PfamPF006125.7E-4697716IPR000048IQ motif, EF-hand binding site
SMARTSM0001511777799IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766779807IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MATDFPGQLL GSEIHGFHNL QDLDAGKVLE EAKSRWLRPN EIHAILCNPK YFTVFVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGYRWKKKRD GKTIKEAHEH LKVGTEERIH VYYAHGEDNQ  120
TFVRRCYWLL DKYAPLKLQS SPVMPLNSNS SSVSNPSTPW LSAERFDSGD GHAYSTAEKD  180
LVDPGSLTVN HHQLRIHDIN TLEWDDLVSS DPNNLITCGD NSSYLNKQNQ VALNGAASYH  240
NASLPASNIS EGNSPINQAI GPYVNSGTTF YSAPAGTYSQ ISNLQLNSNT QSIHYQTMGL  300
DSSLDNLITD GLQSEESSTK WNNDAMATST ASVEDHFFEP SISPGDGSSA SPAIGPGQYS  360
VEGYSFVITD VSHAWAFSTE TTKILVTGYF DEQSLHLANS SLLCVCGDDC ISTEVVQSGV  420
YRCYLPPHSP GLVNLCLSLD GCKPLSQIVS FEYRESAHNG DDVVSKDESS TWERFHLQTR  480
LAYLLLSTSK TLNLLRSKVS PSKLKEADHF QFSLTLPSPS MFSEKMVAVL LSSGTKPNLV  540
THPTAENPGG LTPADIATQR GYEGLAAYLS EKALVSHFND MSIAGNVCGE LQPTEPIIGA  600
ENLSEEEVYL KDTLAAYRTA ADAASRIQEA FRERSMKLQA KVVESSNPEA EARSIVAAMK  660
IQHAFRNYES KKKMAAVAQI QHRFRTWKMR REFLTLRRHA IKIQAAFRGL RVRKHYSKIL  720
WSVGVVEKAV LRWRLKRKGL RGLKVNDAIQ VDEQQHTSDI EEEEGFFKAS RKQAEQRVER  780
AVVTVQAMFR SKKAQVEYQR MKSAYNQASV CVQTLNHYND FDNLHSLLFL LGVWLDKSIN  840
RPTSATVKLK *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041126
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637154.10.0calmodulin-binding transcription activator 5 isoform X4
RefseqXP_021637155.10.0calmodulin-binding transcription activator 5 isoform X5
SwissprotO234631e-135CMTA5_ARATH; Calmodulin-binding transcription activator 5
STRINGLus100411260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-129calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]