PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041261

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 274aa MW: 30788.5 Da PI: 6.8013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041261	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	127	174	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lus10041261 127 SHSLAERVRREKIGERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 174 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.35E-10	121	178	No hit	No description
SuperFamily	SSF47459	3.53E-17	121	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.389	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-17	123	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	127	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-9	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEKQQFPWSS DEWRDPCSSH LHLLPDPTNG GLFFINNNTN QGDPFVESGF SPYKPNSPIP 60 PPDIMNPNPN INITKLQGKS RASAAETGEG SSLSEQIIIG KKRKKETEEE SKDYIHVRAR 120 RGQATDSHSL AERVRREKIG ERMKFLQDLV PGCDKVTGKA VMLDEIINYV QSLQRQVEFL 180 SMKMATVNPR SMEFNNMESL LLPKDNVSEG PIAAAGQQEK EEHQGFPNYS HHFGASNPIR 240 RHNNQDVQMG LWNDDLQSVV KMGTLGLSQQ PRH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	104	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041261

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606780.1	6e-54	PREDICTED: transcription factor bHLH77-like isoform X2
Refseq	XP_022575884.1	4e-54	transcription factor bHLH77-like isoform X2
Swissprot	Q9LK48	4e-50	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A2R6RRH7	2e-53	A0A2R6RRH7_ACTCH; Transcription factor bHLH62 like
STRING	Lus10041261	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	3e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10041261

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]