PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041328

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 223aa MW: 24362.9 Da PI: 11.2999

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041328	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	80.9	3.4e-25	37	137	4	104
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg....kaaksaa 95 k+++ ++h kv+gR+ RvRl+a+caar+F+L++eLG+ +d++t+eWLl+ ++ +tss+s +++ ssss ++ +a ++ Lus10041328 37 NKSSNRDRHRKVDGRGTRVRLPALCAARIFQLTRELGHRTDGQTVEWLLNHVPHSHFPSDQTSSPSLvaNSV--LSSSSRTE----MrprkRAIPEPD 128 68999***********************************************99998888884444322222..12222222....112222222222 PP TCP 96 kskksqksa 104 ++++s+++a Lus10041328 129 SGSSSSSPA 137 222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-19	40	87	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.514	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDVLKKSLRR VKKKKTLKIF THTAPPPPQP LLPVSSNKSS NRDRHRKVDG RGTRVRLPAL 60 CAARIFQLTR ELGHRTDGQT VEWLLNHVPH SHFPSDQTSS PSLVANSVLS SSSRTEMRPR 120 KRAIPEPDSG SSSSSPAPPH TNIPPESSST TIMPPIATPP ASTAPLPPPP PMITPMTALE 180 RRRMKEEPKA AGPSSDFELF RGPDVGLGNL SFTSLLMQWD KD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041328

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10041328	1e-157	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22597	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10041328