PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041355

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 175aa MW: 19497.6 Da PI: 5.3374

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041355	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.1	2.2e-52	42	135	4	97
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 qdr+lPianv+r+mk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy plk yl +yrelege+ Lus10041355 42 QDRMLPIANVGRMMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWALSSLGFDDYCSPLKRYLLRYRELEGER 135 9******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-52	40	165	IPR009072	Histone-fold
SuperFamily	SSF47113	1.77E-39	42	160	IPR009072	Histone-fold
Pfam	PF00808	6.8E-27	45	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-17	73	91	No hit	No description
PROSITE pattern	PS00685	0	76	92	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.8E-17	92	110	No hit	No description
PRINTS	PR00615	1.8E-17	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MVDNYFAHAS STTRDNNTFP FDDFSGEAEA ISSSVAAAAG PQDRMLPIAN VGRMMKQILP 60 PNAKISKEAK ETMQECVSEF ISFVTGEASD KCHKEKRKTV NGDDVCWALS SLGFDDYCSP 120 LKRYLLRYRE LEGERAARSD YNTAPSGSGK RTARQQEEEE EEEVLHHHHS KICN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-41	42	130	4	92	Transcription factor HapC (Eurofung)
4g92_B	3e-41	42	130	4	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041355

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008368975.1	8e-63	nuclear transcription factor Y subunit B-5
Refseq	XP_010259679.1	1e-62	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	1e-55	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2P5FFR9	1e-62	A0A2P5FFR9_TREOI; Nuclear transcription factor Y subunit B
STRING	Lus10041355	1e-129	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-50	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Lus10041355

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]