PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041487
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family RAV
Protein Properties Length: 367aa    MW: 40397.1 Da    PI: 9.5959
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041487genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.5e-1364112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a+++++g
  Lus10041487  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDIAALRFRG 112
                  89****9888.8*********3.....5**********99*************98 PP
2B397.21e-30196302194
                  EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.. 85 
                  f+k+ tpsdv+k++rlv+pk++ae+h            +++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++  
  Lus10041487 196 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqtggaaagVSSSTKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVGFQRSvt 293
                  89****************************99999885555699**************************************************6532 PP

                  SSSEE..EE CS
           B3  86 grsefelvv 94 
                  g+++++l++
  Lus10041487 294 GQDQKQLYI 302
                  335555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.48E-2664119No hitNo description
SuperFamilySSF541711.31E-1664120IPR016177DNA-binding domain
PfamPF008476.5E-864112IPR001471AP2/ERF domain
PROSITE profilePS5103220.58765120IPR001471AP2/ERF domain
SMARTSM003803.2E-2965126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2065120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.5E-39192312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29195291IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-28195291No hitNo description
PfamPF023627.5E-28196304IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916196308IPR003340B3 DNA binding domain
SMARTSM010191.1E-23196308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDGISSSSAD ESTTTTTGES ISPLPTPPPA AKESLCRVGS GASSVVLDSD LSGIEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RSYDIAALRF RGRDAVTNFK  120
KPSLSDASSD DESESESEFL NSHSKAEIVD MLRKHTYNDE LQQSRRRHHH HNRGKQSSTL  180
DSSDNIAARG AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQTGGAA AGVSSSTKGV  240
LLNFEDAGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDTVGFQR SVTGQDQKQL  300
YINWKARSGE GVESNRLVCR VQPVQMVRLF GVNICKPVDG GCNGKRSMEE MVGFHCSKKQ  360
RVIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5619331411124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041487
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649928.11e-169AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-145RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLB9SEJ01e-167B9SEJ0_RICCO; DNA-binding protein RAV1, putative
STRINGLus100414870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-139related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]