PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041493
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 323aa    MW: 35765.4 Da    PI: 6.3593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041493genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14112158354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Lus10041493 112 KNHSEAERRRRHRINTHLSNLRSLLPNT-----TKTDKASLLAEVIQHVKDL 158
                  78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.799109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.80E-13112161No hitNo description
PfamPF000101.3E-11112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-15113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13113172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00513200246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEYYDNCTAL YGGSGGGGAA DFILPHPPPS SSWASTLPHH HHPGMLGHQN SLHFPYQAAG  60
TWDDDDRPAA DHHLRIISDS PLGRFPNYMN NILRTSTTGD DILDAKALAA SKNHSEAERR  120
RRHRINTHLS NLRSLLPNTT KTDKASLLAE VIQHVKDLKR QTSHLIADDE TLLIIPTEDD  180
DLTVEADSVD EEGNFVIKAT LCCQDRHDLL PDLIATLNSL RLRTLKAEIT TLAGRVKHVL  240
FFTSADRDYY SSSSNNNSDD DDNQDNRDDQ CYYQQPRIQQ QYSLSSIHEA LKSVMVKGGG  300
GNGNSSSGGS VKRQRTNRNN NI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297146.12e-79PREDICTED: transcription factor bHLH30
RefseqXP_011462943.12e-79PREDICTED: transcription factor bHLH30
SwissprotQ9LS082e-61BH032_ARATH; Transcription factor AIG1
TrEMBLC0JP316e-78C0JP31_LOTJA; Putative basic helix-loop-helix protein BHLH25
STRINGLus100414930.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]