PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041534
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 248aa    MW: 27101.7 Da    PI: 8.7553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041534genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.35.3e-35181481128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra..tksgyWkatgkdkevlsk 95 
                  lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+e+d+++++P +Lp +  +  ++ yfF+k++ + a  g+r   +     gyWk+t k ++++s+
  Lus10041534  18 LPIGVRFRPTDEELIVHYLRRKVLGLPLPA-SVISELDVFHTHPCSLPGNS-SCWEKRYFFCKKEGNVAgAGNRGGGVsgCGGGYWKHTRKARHIVSS 113
                  699***************************.99***************433.345677*****99988734666655423459**************9 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++lvg++++Lvf k++a++ ++t+Wvmhe+ l
  Lus10041534 114 scNNQLVGMRTSLVFRKQNASHHSNTKWVMHEFCL 148
                  999999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-4115176IPR003441NAC domain
PROSITE profilePS5100540.01418176IPR003441NAC domain
PfamPF023651.0E-2119147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEAKQNMVVN GGGGIKVLPI GVRFRPTDEE LIVHYLRRKV LGLPLPASVI SELDVFHTHP  60
CSLPGNSSCW EKRYFFCKKE GNVAGAGNRG GGVSGCGGGY WKHTRKARHI VSSSCNNQLV  120
GMRTSLVFRK QNASHHSNTK WVMHEFCLVG LATIPFTNQV AKVQLGDWVV CSVFQKKKRH  180
SNSNMKKPPN PIEFRMEELS DRGPEEEEEP GSPCSSGVTE LSNSTSYSSN GVDGEGDINS  240
FNVSFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-251817717166NO APICAL MERISTEM PROTEIN
1ut4_B6e-251817717166NO APICAL MERISTEM PROTEIN
1ut7_A6e-251817717166NO APICAL MERISTEM PROTEIN
1ut7_B6e-251817717166NO APICAL MERISTEM PROTEIN
3swm_A5e-251817720169NAC domain-containing protein 19
3swm_B5e-251817720169NAC domain-containing protein 19
3swm_C5e-251817720169NAC domain-containing protein 19
3swm_D5e-251817720169NAC domain-containing protein 19
3swp_A5e-251817720169NAC domain-containing protein 19
3swp_B5e-251817720169NAC domain-containing protein 19
3swp_C5e-251817720169NAC domain-containing protein 19
3swp_D5e-251817720169NAC domain-containing protein 19
4dul_A6e-251817717166NAC domain-containing protein 19
4dul_B6e-251817717166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643874.11e-62NAC domain-containing protein 83-like
TrEMBLB9RH273e-61B9RH27_RICCO; Transcription factor, putative
STRINGLus100415340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.13e-33NAC domain containing protein 84