PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041540
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 693aa    MW: 76226.6 Da    PI: 5.6196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041540genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.14.8e-1363276911374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l+  +sp gd+mqR+aa+fteAL+arla    ++ + +a +p +  ++ns e l++++++++++P++kf+h+
  Lus10041540 327 LVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVAACFTEALSARLAAtlATKPTTSAPRPFTPFPSNSMEILKIYQILYQACPYIKFAHF 424
                  68****************************************************965566677777777777899*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e ++etg+ L+++A++l vpfe+++ va++ledl+++++
  Lus10041540 425 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SPECVRETGRCLTELAHSLYVPFEYHA-VAEELEDLKPHMF 517
                  *****************************************************....9**************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn+v +lhr++    s+      +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Lus10041540 518 NRRVGEALAVNSVNRLHRVP--GRSI----GPLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 609
                  *******************9..3344....46****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vaceg er+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Lus10041540 610 EIKNIVACEGVERTERHERLEKWRKVMEGKGFKGVALSGNAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRAILAASAWR 691
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.47301671IPR005202Transcription factor GRAS
PfamPF035141.7E-133327691IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MHHQPTSPND SSVSESMKAT MSSSDMDQQQ QQQQTILTPP SLNFHPAVKF EVDGDVEIQS  60
PDSSIWDSFF SDHVAEGDFM ISSPVRNATN LFPSPSSFSY STYVQSMQGQ SSSITGCSPT  120
RHLSSQLGSF SSTTSLKGKG QSPLHRMFNS PNNNNHFMQL ESLTGIDDFL DDYKDHGGGN  180
TSSDTSKIMS SSSSNNGGPT TAQLFDLSIP VSSMMDCLTM PNPPSRFCES TSNSCGTTTT  240
HQLVEEREMF PMGPLASLSD RLQEERDQEK QVQKLQLHHA APSAETTTTA QQPLEHAQQA  300
GLSGHGGLMV PLPVESEQEQ SDSGLQLVHL LLACAEAVAK EDYMLARKYL HHLNRVVSPL  360
GDSMQRVAAC FTEALSARLA ATLATKPTTS APRPFTPFPS NSMEILKIYQ ILYQACPYIK  420
FAHFTANQAI FEAFEAEERV HVIDLDILQG YQWPAFMQAL AARPGGAPFL RITGVGSSPE  480
CVRETGRCLT ELAHSLYVPF EYHAVAEELE DLKPHMFNRR VGEALAVNSV NRLHRVPGRS  540
IGPLLGMIRD QAPNIVTLVE QEASHNGPYF LGRFLEALHY YSAIFDSLDA TFPPDSAQRA  600
KVEQYIFAPE IKNIVACEGV ERTERHERLE KWRKVMEGKG FKGVALSGNA VTQSKILLGL  660
YSCDGYRLTE DNGCLLLGWQ DRAILAASAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-10031869010378Protein SCARECROW
5b3h_A1e-1003186909377Protein SCARECROW
5b3h_D1e-1003186909377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641856.10.0scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9GF630.0B9GF63_POPTR; Uncharacterized protein
STRINGLus100415400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]