PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041548

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7176.43 Da PI: 10.7049

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041548	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie+ks rqvtfskR+ g+lKKA+ELSvLC++evav+ifs gklye+s Lus10041548 10 PIEDKSTRQVTFSKRKRGLLKKAQELSVLCGVEVAVVIFSGGGKLYEFS 58 79**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.002	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-27	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGRGKVEMRP IEDKSTRQVT FSKRKRGLLK KAQELSVLCG VEVAVVIFSG GGKLYEFSGG 60 ERIAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	6e-18	1	61	1	61	MEF2 CHIMERA
6byy_B	6e-18	1	61	1	61	MEF2 CHIMERA
6byy_C	6e-18	1	61	1	61	MEF2 CHIMERA
6byy_D	6e-18	1	61	1	61	MEF2 CHIMERA
6bz1_A	6e-18	1	61	1	61	MEF2 CHIMERA
6bz1_B	6e-18	1	61	1	61	MEF2 CHIMERA
6bz1_C	6e-18	1	61	1	61	MEF2 CHIMERA
6bz1_D	6e-18	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041548

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021657833.1	1e-26	MADS-box transcription factor 8-like
Refseq	XP_022733399.1	1e-26	agamous-like MADS-box protein AGL70
Swissprot	Q38837	8e-24	AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBL	A0A2N9IT15	6e-25	A0A2N9IT15_FAGSY; Uncharacterized protein
STRING	Lus10041548	2e-38	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61120.1	3e-26	AGAMOUS-like 13

Link Out ? help Back to Top
Phytozome	Lus10041548

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]