PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041614
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 219aa    MW: 24171.8 Da    PI: 9.0133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041614genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-181260254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr+++ +g+Wv+eIr+p        +r++lg+f +ae+Aa+a+++a++ + 
  Lus10041614 12 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFESAEDAARAYDEAARLMC 60
                 69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-401275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-341270IPR001471AP2/ERF domain
PfamPF008477.3E-111261IPR001471AP2/ERF domain
PROSITE profilePS5103220.9161269IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-201271IPR016177DNA-binding domain
PRINTSPR003671.5E-101324IPR001471AP2/ERF domain
CDDcd000181.27E-252071No hitNo description
PRINTSPR003671.5E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATRQQQQQQ QRYRGVRQRH WGSWVSEIRH PLLKTRIWLG TFESAEDAAR AYDEAARLMC  60
GPKARTNFPY SPAHDQAQAQ SSSTSTSSFL TGALAAKLHK CHMASLRRIP LSSAKKNNSK  120
SKPRHYTNTS SSNSTNAVKN EFAIDKHHEA AQCGGCGSRD RGRSWDDNGR GSLERGDQAT  180
AGEVGADDDI IIEQMIEELL DSGTSIELSL VTKHHPCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-151169160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232223.12e-58PREDICTED: ethylene-responsive transcription factor ERF003-like
TrEMBLA0A1J6KDP74e-57A0A1J6KDP7_NICAT; Ethylene-responsive transcription factor erf003
STRINGLus100416141e-163(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-28ERF family protein