PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041649

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 284aa MW: 30547.1 Da PI: 9.7732

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041649	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.5e-05	189	220	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++l+ + +K + a++L++A++YI+ L Lus10041649 189 DRIVGLQQLVSPY-----GKTDTATVLQEAIDYISFL 220 5666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.775	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-9	186	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	187	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-4	189	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAFASNGKPS VVMVMVMVMS MLVIAAAAAS EIGVKCNHKS VANNNAVAAS IARGILKMVN 60 ETPNSSNLRT DITGEIHATR FELVLHLGKL AMLACSGLWM LRDFHPNPIH QQHSINAIHG 120 EREPSNSGRC KFPNPNGAHI TVDVNLQAPV SNKMLKNKRP SSTSSFRHTK RMKSDDHHPN 180 SRKDKQLGDR IVGLQQLVSP YGKTDTATVL QEAIDYISFL HQQLKVLSSP YLLFSSATIN 240 NGGIEISTGA LQSRGLCLVP LDATAVIDHG ANGADLWAPT TTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041649

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10041649	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31730.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10041649