PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041714
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 560aa    MW: 64909.3 Da    PI: 9.1934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041714genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07353389342
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                      +WT+eE e+  +  k++G + Wk  a+ +g  +t+ ++k+
      Lus10041714 353 KWTEEEREIVMKHYKKHGAN-WKPLAEAFG--KTRLHVKN 389
                      8*****************99.********8..89999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.001276341IPR009057Homeodomain-like
SMARTSM007170.012277348IPR001005SANT/Myb domain
SMARTSM007171.3350397IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-8351408IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-7353404IPR009057Homeodomain-like
PROSITE profilePS500905.866353395IPR017877Myb-like domain
PfamPF139217.1E-10354411No hitNo description
PROSITE profilePS500907.758396464IPR017877Myb-like domain
SMARTSM007175.1E-4400466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-8405466IPR009057Homeodomain-like
SuperFamilySSF466897.94E-5444525IPR009057Homeodomain-like
PROSITE profilePS500906.319466519IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVNGEVGSTE FVRGMEERNS RKKRKRIKGN DLVDSSSGMD LSKVEHGVGS SNRIEAGNFN  60
SPNERSKKKK RKKHGNDQMI MNEELGDAGA VVREDKENGG KGRSGIVNLN CKASNDKEEA  120
KEKKKRKKNK KKKVKHNIDT EAILKEARVG NNEADGKDIR YNGDSHGEPA VGNSEKEEDK  180
KKKKDKDKDK KTTQLVLEEP ILQECSVGDD EAATKELENT EYSKDRTKDK KKQTIDVGKR  240
VEINTDAPEI SPLKSTSKRV SFDEDLEVLT SSNDLVRGKR FTPEEDKLVQ AACWEYVYSK  300
DLGDEGIQMI LNCRTHKRDN NCWKEICAAI PWRPRESVRY RAHILFERGE SRKWTEEERE  360
IVMKHYKKHG ANWKPLAEAF GKTRLHVKNT HRRFKFENLK KGRWTQDEVE QVYDLVNTNL  420
KMKAFEERKS KHGMFKDNIC WGAISEKLKT RNHSHCSQKW YRQLASPMVQ QKKWFDMDDY  480
YLVIELYNLD ACCMEDVDWD CLLEHRSGDV CRKRWNEMVK HLGDCSNKSF SEQVEILAKR  540
YTPDVLEARE AYYTKPVVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKKRKR
26369ERSKKKK
36671KKKKRK
46672KKKKRKK
5122130KKKRKKNKK
6123127KKRKK
7179190KKKKKDKDKDKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8883441e-108HQ888344.1 Linum usitatissimum clone GMU2AYZ01AML72 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442598.11e-141RNA polymerase I termination factor
TrEMBLA0A2K1XKK61e-140A0A2K1XKK6_POPTR; Uncharacterized protein
TrEMBLA0A2P2JN051e-143A0A2P2JN05_RHIMU; Myb family transcription factor family protein
STRINGLus100417140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-109MYB_related family protein