PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041719
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25283.4 Da    PI: 6.1593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.4e-1959111456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Lus10041719  59 KRKLTDEQVTLLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 111
                  5689************************************************9 PP
2HD-ZIP_I/II119.81.5e-3858149293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkr+l++eqv+lLE +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+++d ++ +++rLe+ev +L+e+l+e
  Lus10041719  58 KKRKLTDEQVTLLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKTKKLEEEYSKLKSSHDLITLHKCRLESEVLQLKEQLSE 149
                  9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.8E-1756117IPR001356Homeobox domain
PROSITE profilePS5007116.26158113IPR001356Homeobox domain
SuperFamilySSF466892.01E-1758114IPR009057Homeodomain-like
CDDcd000861.00E-1558114No hitNo description
PfamPF000468.1E-1759111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2060120IPR009057Homeodomain-like
PRINTSPR000319.6E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000319.6E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDDFSCNTLI YPAAVYDPQP LLLPPHQEGE EPNQKAAGRR RRRKKKDQSN GGEGSILKKR  60
KLTDEQVTLL ELNFGNEHKL ESERKDRLAA ELGLDPRQVA VWFQNRRARW KTKKLEEEYS  120
KLKSSHDLIT LHKCRLESEV LQLKEQLSEA EKEIQRLSIT ERSADVASSN SPSSSLTTMD  180
PQQQFFGGGG GFGVVEDQYQ DVFYSMPESA YVANGMEWVY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945RRRRKKK
23946RRRRKKKD
34146RRKKKD
44360KKKDQSNGGEGSILKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041719
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432141.11e-63PREDICTED: homeobox-leucine zipper protein ATHB-40-like
RefseqXP_010437310.11e-63PREDICTED: homeobox-leucine zipper protein ATHB-40-like
RefseqXP_010446748.11e-63PREDICTED: homeobox-leucine zipper protein ATHB-40
RefseqXP_012491697.11e-63PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-60ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2TIR83e-62A0A0D2TIR8_GOSRA; Uncharacterized protein
STRINGLus100417191e-164(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-47homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]