PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041780
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 188aa    MW: 20266.4 Da    PI: 4.7439
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041780genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.7e-143989559
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                 ++ +rk +NRe+ArrsR+RK++ ++ L+  v +L++eN     e+ +  ++  +l
  Lus10041780 39 RKRKRKLSNRESARRSRLRKQQHMDDLTAQVSQLKKENA----EILTSMNLNTQL 89
                 5789**********************************7....555555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-173599IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.3E-113781No hitNo description
PROSITE profilePS5021710.7723784IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-113991No hitNo description
PfamPF001703.4E-113984IPR004827Basic-leucine zipper domain
CDDcd147028.03E-184090No hitNo description
PROSITE patternPS0003604257IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASSSTGASS GSSGGGGGRA LMRNSSSEED LQAAVVDERK RKRKLSNRES ARRSRLRKQQ  60
HMDDLTAQVS QLKKENAEIL TSMNLNTQLL LSVEADNSVL RAQAAELNHR LESLGEIVNY  120
VYSLRNGAVQ ASGAPTNCDG SSGTTTSDGD DLFEEAAGTD ECLMTTNEMN PWISSSYQPM  180
MMDMVMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744ERKRKRKL
23843RKRKRK
35157RRSRLRK
45158RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310269.39e-45bZIP transcription factor 11
TrEMBLA0A2K1ZMX52e-43A0A2K1ZMX5_POPTR; Uncharacterized protein
STRINGLus100417801e-135(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-40basic leucine-zipper 44