PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041802
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 232aa    MW: 24640.8 Da    PI: 9.1452
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041802genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702118.11.2e-36145221478
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel 78 
                  g++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpaakrrerqqq++  +s ++ ++  ++  +kr+r+ 
  Lus10041802 145 GGISCQDCGNQAKKDCSHSRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQQHHVTSVQQPHQqqHQVVPKRPRDP 221
                  789**********************************************9888776654443332266677888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-33146220IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-27148190IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGGGRGSS GNTNNNNNNN NTEITPESNN NSSWFGSWYR PPPNTTEDNF  60
PSSSSSRPAA ALELWQQQQQ QAELMQRQQD LYSSAAGLGV GLTHHHLYLS ADHPSSRSAA  120
ALMMMRPGGG GGGGRGSSST SNVGGGISCQ DCGNQAKKDC SHSRCRTCCK SRGYDCQTHV  180
KSTWVPAAKR RERQQQQHHV TSVQQPHQQQ HQVVPKRPRD PTSSSLVSPP D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775373.11e-46protein SHI RELATED SEQUENCE 1-like isoform X3
RefseqXP_022775374.17e-47protein SHI RELATED SEQUENCE 1-like isoform X4
RefseqXP_022775375.17e-47protein SHI RELATED SEQUENCE 1-like isoform X5
RefseqXP_022775376.13e-47protein SHI RELATED SEQUENCE 1-like isoform X6
TrEMBLA0A1J3F6G54e-45A0A1J3F6G5_NOCCA; Protein SHI RELATED SEQUENCE 1
STRINGLus100418021e-169(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2530023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-28Lateral root primordium (LRP) protein-related