PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10041803

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SRS

Protein Properties

Length: 118aa MW: 11760.7 Da PI: 4.1134

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10041803	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	45.6	2.5e-14	1	33	120	151
DUF702 120 vssvddgeee.laYqtavsigGhvfkGiLydqG 151 +s+vdd++++ +aYqtavsigGh+fkGiLydqG Lus10041803 1 MSGVDDSDAQqYAYQTAVSIGGHTFKGILYDQG 33 689*77655*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01624	1.0E-15	1	33	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF05142	2.6E-11	1	33	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MSGVDDSDAQ QYAYQTAVSI GGHTFKGILY DQGRLGGGES SSYMAATTDT SSASGVQPLN 60 LITTAASASA SASSNIGSGG VTSNAAGASY LDPSSLYTAV PLSNYMAGTQ FFPNNPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10041803

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028610.1	1e-26	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	2e-20	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	B9T5Y4	1e-24	B9T5Y4_RICCO; Transcription factor, putative
STRING	Lus10041803	5e-77	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-20	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Lus10041803

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]