PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041810
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 224aa    MW: 24141.1 Da    PI: 10.0308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041810genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-19140174135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+ kTp+WR+gp g ktLCnaCG+++++ +l
  Lus10041810 140 CSHCGVQKTPQWRSGPLGAKTLCNACGVRFKSGRL 174
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.583134170IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-17134188IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-14134196No hitNo description
Gene3DG3DSA:3.30.50.104.2E-15138172IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.16E-13139187No hitNo description
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
PfamPF003202.6E-17140174IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDSNSEYSAP FPAGIVPQKA KSEINFEPVV EEEPCFKSPV PAKARSKRTR TGIRVWSLGS  60
TTLTDSSSSS TSSSSSSSSP LSCPWVICTV NTQGSFSLEQ NEKPAAKNKP KKRRPSLDCG  120
NNNNNNNNAN NSAAPPPRRC SHCGVQKTPQ WRSGPLGAKT LCNACGVRFK SGRLLPEYRP  180
ACSPTFSSEL HSNHHRKVLE MRKKNEVPGQ AEPDLGPSVV PSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602140.17e-72GATA transcription factor 5
SwissprotQ9FH572e-53GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2C9WE172e-70A0A2C9WE17_MANES; GATA transcription factor
STRINGLus100418101e-161(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-44GATA transcription factor 5