PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042128
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 181aa    MW: 20462.7 Da    PI: 10.3622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042128genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.9e-081262654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                 + +E++RR  ++    +L +llP+  +k+++k  ls  + + +Av YI +L
  Lus10042128 12 KTVEKNRRILMKGLCLKLVSLLPPtYFKTSHKHlLSQPDQVDHAVSYITQL 62
                 679*********************999*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-71181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-81278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-41362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNKLQCQVVD RKTVEKNRRI LMKGLCLKLV SLLPPTYFKT SHKHLLSQPD QVDHAVSYIT  60
QLSQRIEKLK QKKEELAAAT SSRDHRARID DRDQGPRKVV VEVRESGSSI EVTLISGVQK  120
SFMLHEVLSI VEQEGGEVVS VNLSTVGGKT FHTIHARVKI CRVGVETSRM RQRLQDTVYF  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021669836.15e-64transcription factor bHLH162-like
TrEMBLA0A2P6P5W21e-60A0A2P6P5W2_ROSCH; Putative transcription factor bHLH family
STRINGLus100421281e-129(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.15e-21bHLH family protein