PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042180
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35601.9 Da    PI: 4.4182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042180genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19101154356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Lus10042180 101 KKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARWK 154
                  56689************************************************9 PP
2HD-ZIP_I/II131.33.7e-42100192193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqv++LE+sFe ++kLep+rKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++d+l+++ + L ke+++L++e+++
  Lus10042180 100 EKKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQSSFDTLQADYAGLLKEKNHLKSEIDS 192
                  69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-2080158IPR009057Homeodomain-like
PROSITE profilePS5007117.58996156IPR001356Homeobox domain
SMARTSM003895.5E-2099160IPR001356Homeobox domain
CDDcd000868.40E-18101157No hitNo description
PfamPF000461.6E-16101154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-20103163IPR009057Homeodomain-like
PRINTSPR000318.9E-6127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000318.9E-6136152IPR000047Helix-turn-helix motif
PfamPF021832.9E-14156198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSAMANDVGG GGGGGTCVTN LPPALHRNNK RSHQSASQPL DSFFLPGSSP SFLGPRSIVR  60
FDDASQVNGS SSSSSKPFFC SFELDENGDD DLDEYFRQPE KKRRLSVEQV QFLEKSFEVD  120
NKLEPDRKVQ LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDTLQSSFD TLQADYAGLL  180
KEKNHLKSEI DSLTEKLQQK ERAKAFSDMS QGQMEKPAQP CKQEDISSAR SDIFDSESPH  240
YTDGVHSSLL EAGDSSYVFE PDQSSDLSSQ DEEDNLSRNL LPAAASYVLF PKLEDEDDYS  300
DPSASFEDNA FWSSWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321530.21e-133homeobox-leucine zipper protein HAT5
TrEMBLA9PHH01e-131A9PHH0_POPTR; HD-ZIP family protein
STRINGLus100421800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1