PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042209
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 492aa    MW: 55736.1 Da    PI: 8.1196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042209genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11438487147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + rW+ eE++ l  +v+++G g+Wk+I    +     Rt+ ++k++w++ 
      Lus10042209 438 KRRWSVEEEDALRAGVEEFGRGCWKAILYSRPeafVERTEVDLKDKWRNM 487
                      579********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.821433491IPR017930Myb domain
SuperFamilySSF466892.69E-14434488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-12437487IPR009057Homeodomain-like
SMARTSM007178.2E-9437490IPR001005SANT/Myb domain
PfamPF002493.5E-9438487IPR001005SANT/Myb domain
CDDcd116602.08E-16439488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAAAREPDKD LSRWALDFLL RQPIPGILLE KVAFNLKHSV VDYCLEKQLK LKQIQSEISK  60
GSISENILES LEAIEQLERD SGGAPISQTM KTAYCAVALE FTVKGGIRSE FVERIWRGRV  120
HDLESLSRRS ELVTDELRKF KDEIEAAVCD VNACMRLFKW TKQNDAKLLV RAYLDEAMAA  180
NNNEPSFLHL AAARWKKMEL EKKNKTTEEG MDTAFIRVPD HVEQPISGSP DANLRKRTNA  240
YNRVKQIARK RQKKQARIWD NPSSKYDTLP SPEVKQVQDA FRSSSIDLQA VVTDPLPNAM  300
HVSESLIAEA PRNIITNKEK SVGNQNEDNV GASHPPAESS MPELRSRTLD PDIPAEEGNR  360
EEVDEPEPST QQNHQNVSRP SLMTRNPTAC TYEWDDSISS LSQGSSNGGR RIRMTLPKRG  420
VVLPLTKGDG INVPRRKKRR WSVEEEDALR AGVEEFGRGC WKAILYSRPE AFVERTEVDL  480
KDKWRNMTAY R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100422090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-13MYB_related family protein