PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042292
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 408aa    MW: 45305.5 Da    PI: 6.0425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042292genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-184690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W++I +++g ++t+ q++s+ qk+
      Lus10042292 46 REKWTEEEHQKFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKF 90
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-164094IPR009057Homeodomain-like
PROSITE profilePS5129421.8624195IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-104296IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-164493IPR006447Myb domain, plants
SMARTSM007174.1E-144593IPR001005SANT/Myb domain
PfamPF002499.1E-164689IPR001005SANT/Myb domain
CDDcd001672.90E-124891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAASQDEVQE ALPNQVDGGE QMMEMNSFGS QQLPKARKPY TVSKQREKWT EEEHQKFLEA  60
LKLYGRGWRK IQEHVGTKTA VQIRSHAQKF FSKVVRETTV GAESSIKPIE IPPPRPKRKP  120
LHPYPRKCVD GLLDQFERSQ SPNLLGIEKE NRSPTSVLEP QNGCSSSSTS DLQSSSMLLP  180
NEKDNEQIMS NSSQREGNGS SSPLDDSAPE ELPVELQASL KTAAFAENER AVVPVTRSRS  240
FKLFGRTVLV PDSEKASSQQ DCIGVKLSLG LVNPDSNRLL SDPQASRTKD KLENTAEANC  300
SLSPWGLSHS SLHNYLQQPI TGNILKEREA VDETFCTGSD AGSTNEVENR EKSMDVADSQ  360
PEERLSSVRI YSSRGFMPYK RCLAERDMTS TLAASEERDQ QRSRVCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037069.15e-95PREDICTED: protein REVEILLE 7
TrEMBLA0A061FVK61e-93A0A061FVK6_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRINGLus100422920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-48MYB_related family protein