PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042504
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 218aa    MW: 22751.6 Da    PI: 5.7034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042504genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17169202134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C  C++++Tp+WRrgp g+ktLCnaCG++y k+ 
  Lus10042504 169 CMLCNVSETPMWRRGPHGPKTLCNACGIKYHKEA 202
                  777***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.42E-13161204No hitNo description
SMARTSM004011.3E-11163211IPR000679Zinc finger, GATA-type
CDDcd002021.97E-11168196No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14168204IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.754169198IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMKKLDLNLK LSLSTHASES IDIPDDTPNN FDSKSPFTFD FGSPKANIPQ DVETDLRIGS  60
GSGGVNQQYG YAAPASGGTT VVGVPAVAVY MNQMELVNNN EPILQLAPPG DDLNEGGESS  120
DSNSNSAPAA APAALPVPPA APAALPVPPA ALPANFFNGM MTRQIQNVCM LCNVSETPMW  180
RRGPHGPKTL CNACGIKYHK EAKKKKEREG GSTSGSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100425041e-159(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-10GATA family protein