PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042572
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 174aa    MW: 19734.1 Da    PI: 10.4516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042572genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14144755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Lus10042572  1 MAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLR 44
                 58*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.57E-12148No hitNo description
PfamPF000105.1E-12143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.206143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYL KQLRKKIQDL EAKNRQFEMD  60
PQRIGSGSEN KKMRTAAEAK RGKTPTKAKE TSVEVSIIEK DALLELECEH REGLLLDMML  120
KLREMRIEVT TVQSSLSDGV LVAELRAKVK ENGGGKKVSI VEVKRAINGI IQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-152571267Transcription factor MYC2
5gnj_B7e-152571267Transcription factor MYC2
5gnj_E7e-152571267Transcription factor MYC2
5gnj_F7e-152571267Transcription factor MYC2
5gnj_G7e-152571267Transcription factor MYC2
5gnj_I7e-152571267Transcription factor MYC2
5gnj_M7e-152571267Transcription factor MYC2
5gnj_N7e-152571267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERRRRE
238RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042572
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189967.17e-69basic helix-loop-helix protein A isoform X2
SwissprotE3SXU42e-67BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A392MJ731e-67A0A392MJ73_9FABA; Transcription factor TT8-like (Fragment)
TrEMBLA0A3Q7YAT72e-67A0A3Q7YAT7_CICAR; basic helix-loop-helix protein A isoform X2
STRINGLus100425721e-120(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-47bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]