PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042626
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 364aa    MW: 41399.2 Da    PI: 9.119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042626genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05109131123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Lus10042626 109 FVCEICKKGFQRDQNLQLHRRGH 131
                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-5108131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.45E-5108131No hitNo description
PROSITE profilePS5015710.887109147IPR007087Zinc finger, C2H2
SMARTSM003550.039109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355280153183IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4176209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.45E-5183208No hitNo description
SMARTSM00355180188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFPSSSSSSF PGHAMFNNSA ASFSEEEEDA SRLLLVPHNH HQVQDNFFNL ITNQQPAPSS  60
SLLFPNSATV VVPGTSLPPA KAKKKRSLPD PEAEVIALSP KALLATNRFV CEICKKGFQR  120
DQNLQLHRRG HNLPWKLKQR NHNKEEPIKK KAYVCPEPSC VHHHPSRALG DLTGIKKHYC  180
RKHGEKKWKC EKCSKIYAVH SDWKAHSKTC GTREYRCDCG TLFSSLGYIE IASHNWSVYV  240
ANHLLIGLEE YYCRRNMSYP SGDMNFMVMH FLDMVDLDSI GPKVRPTCAY WDEDLVSTVV  300
RRIRNPGETW SFKLKKRESL EAVLEPIILN WLEDVFNEGP TQLSSSYGRT QPRQQSARRG  360
HLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-20184224343Zinc finger protein JACKDAW
5b3h_F5e-20184224343Zinc finger protein JACKDAW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100426260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-86indeterminate(ID)-domain 2