PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042647
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 259aa    MW: 28602.1 Da    PI: 8.4713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042647genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08164204954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Lus10042647 164 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 204
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-12157209No hitNo description
SuperFamilySSF474592.49E-14159214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6165204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERYSSSSSS TDDHQDHQTT TTTMPMESML MMMAEKQHLP VVDDYLYSFD CGGATNPTNA  60
TTINPFNTNN PLPSTTLSFS TTSQDQQSIS WRDLMMTGES GNDNVVNGRG MGSNNSNNKA  120
SMAAMREMIF RIAAMQPIHI DPESVKPPKR RNVRISKDPQ SVAARHRRER ISEKIRILQR  180
LVPGGTKMDT ASMLDEAIHY VKFLKNQVQS LERNAPHRPP APVAAGIGFP VPVTNGHWKS  240
GYNQQPPAHQ DISGYGDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102968.11e-68transcription factor HEC2-like
TrEMBLA0A2G9G6X71e-66A0A2G9G6X7_9LAMI; Uncharacterized protein
TrEMBLE0CPU42e-66E0CPU4_VITVI; Uncharacterized protein
STRINGLus100426470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-45bHLH family protein