PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042810
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 78aa    MW: 8549.61 Da    PI: 4.8432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042810genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.6e-141411050
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                 ++kNRe+A rsR+RK+a++ eLe  + +Le+e ++L ke  
  Lus10042810  1 MIKNRESAARSRERKQAYQVELESLAVKLEEEHEQLLKEKF 41
                 68**********************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001702.2E-11139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-12143No hitNo description
SuperFamilySSF579592.88E-9144No hitNo description
PROSITE profilePS502178.829139IPR004827Basic-leucine zipper domain
SMARTSM003380.0074160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MIKNRESAAR SRERKQAYQV ELESLAVKLE EEHEQLLKEK FLLNHAAYGE SDSCGGEAKT  60
GTNAAQSLLL GVVDDIM*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284665.11e-16G-box-binding factor 4
RefseqXP_024458000.11e-16G-box-binding factor 4 isoform X1
RefseqXP_024458002.18e-17G-box-binding factor 4 isoform X4
SwissprotP427771e-15GBF4_ARATH; G-box-binding factor 4
TrEMBLB9SE725e-16B9SE72_RICCO; Transcription factor, putative
STRINGLus100428108e-49(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-11G-box binding factor 4