PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042879
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 229aa    MW: 24362.6 Da    PI: 6.5008
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042879genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17172206135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10042879 172 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 206
                  *******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-13166214IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-11169205No hitNo description
PROSITE profilePS5011411.451170202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-13170204IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-12171225No hitNo description
PfamPF003203.4E-15172206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDVYGSINPS SDSFNFPIDD LLDFSSDGLF SSTTTSSSTA STPDHLPSLP SFHHHHSSSF  60
HLAAPDFTPD YFAHQLSLPN DDVAELEWLS QFVDDSFADF PPNSLAVVQS TAAAVSSSSS  120
FSFSSASRGR AARSKRSRLP AVNGGGAAAW KVEGGVSSRA SSPTPEGGVR RCTHCASEKT  180
PQWRTGPMGP KTLCNACGVR YKSGRLTENC RGVDCDGVRE RKSNSENY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083638.16e-59GATA transcription factor 4
SwissprotO497411e-42GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A067K9621e-57A0A067K962_JATCU; GATA transcription factor
STRINGLus100428791e-166(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-34GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]