PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042995
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 208aa    MW: 23300.9 Da    PI: 6.5525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042995genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15104154255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr ++ +g ++AeIrdp+      r++lg+fg+  +Aa+a++ a  +++g
  Lus10042995 104 KFRGVRKRP-WGEYAAEIRDPTRK--GSRVWLGTFGSDVDAARAYDFAEFEMRG 154
                  89*******.**********8542..4**********99**********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-28103163IPR001471AP2/ERF domain
SMARTSM003802.2E-29104168IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-19104164IPR016177DNA-binding domain
PfamPF008473.4E-10104154IPR001471AP2/ERF domain
CDDcd000181.85E-24104162No hitNo description
PROSITE profilePS5103222.695104162IPR001471AP2/ERF domain
PRINTSPR003671.0E-10105116IPR001471AP2/ERF domain
PRINTSPR003671.0E-10144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSTLAESTAL QLIKQHLLDD ESSSSSSSPA HLFISNFNSL PFKIKEEEDQ SRSPVRSSES  60
ELDCFFFQQQ SPEFLRDQTT SSKSAASGSP VPSDQKVQEE GGRKFRGVRK RPWGEYAAEI  120
RDPTRKGSRV WLGTFGSDVD AARAYDFAEF EMRGRKAILN FPLEAGKYDL PVCTASRKRR  180
KLKNQAAATA PVNWEDEDQK TLLWALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24102163364ATERF1
3gcc_A6e-24102163364ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297531e-137EU829753.1 Linum usitatissimum clone LU0011F06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090504.12e-45ethylene-responsive transcription factor ERF106
TrEMBLA0A1L6CB052e-44A0A1L6CB05_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB782e-44A0A1L6CB78_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100429951e-151(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-37ERF family protein