PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043234
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 183aa    MW: 20832 Da    PI: 6.793
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043234genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.3e-1472175296
                  EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.se 89 
                  +k+lt sdv+ s +rl+l+k++a++         ++  +++ +t++d +g+++ +kl+ +  +  yvlt+GW+ F++a++L    D v   + +r ++
  Lus10043234  72 EKQLTESDVNPSqARLSLSKDYARDSilpllnsTEDVVRGIRVTVYDADGKEFPMKLKLWAEK-VYVLTSGWRPFAEAHRLVsHEDYVAVWVFRRlDT 168
                  79*******98879*********999***998844446999****************999986.8****************94445443333345566 PP

                  E..EEEE CS
           B3  90 felvvkv 96 
                  ++l+v v
  Lus10043234 169 GSLCVAV 175
                  6666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-1471155IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.9E-671179IPR003340B3 DNA binding domain
CDDcd100177.65E-1671175No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1671173IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-1072155IPR003340B3 DNA binding domain
PROSITE profilePS5086310.34872179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEEDNKELSR AALQLIVLMY SKPERQKALP IPPDEKIPKL TREQHWRPPP IRPPAIPGLP  60
EFLIGECTEP YEKQLTESDV NPSQARLSLS KDYARDSILP LLNSTEDVVR GIRVTVYDAD  120
GKEFPMKLKL WAEKVYVLTS GWRPFAEAHR LVSHEDYVAV WVFRRLDTGS LCVAVTSRQL  180
PV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448606.14e-45PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A0D2U8069e-44A0A0D2U806_GOSRA; Uncharacterized protein
STRINGLus100432341e-131(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-26B3 family protein