PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10043387

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 450aa MW: 50709.1 Da PI: 6.8348

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10043387	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.7e-11	147	184	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k++rr+++NReAAr+sR+RKka++++Le +L + Lus10043387 147 AKAQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQL 184 799*************************9854444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-6	144	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.312	146	190	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	147	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	148	191	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	148	191	No hit	No description
PROSITE pattern	PS00036	0	151	166	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-32	226	301	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MEQNNSHSDG PEFDFGELEE AIFLQGGVKI RNEERPLREG ADAAAAAGKT LEIMFPSWPM 60 RFQHTCTPTI LPEQQGSSRS GEESTDDDSG SAVNTTTVTT ADQNQHKRSA PPASSSSDHF 120 QQHHQMEISA AVNDKRKVTP LEKSLDAKAQ RRLAQNREAA RKSRLRKKAY VQQLESSRMK 180 LAQLEQELHR ARQQGVFIGA ASGNLSSAAA MFDAEYGRWV EEDLRQMSEL RSALHSQLPD 240 SELREVVERY ICHYDEIFRL KGATAKSDVF HLITGMWCTS AERCFLWMGG FRPSDLIKML 300 ISQLDPLTEQ QVMGIYSLQH STQQAEEALT QGLEQLQHSL VDTIAAPADW MQQMAIALGK 360 VSNLQSFLRQ ADNLRQQTIH HLRRILTARQ AARCFLVIGE YYRRLRALSS LWASRPREVM 420 SEEKSCQMIT SDVQMAQLPP PQHAHFASF*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MEQNNSHSDG PEFDFGELEE AIFLQGGVKI RNEERPLREG ADAAAAAGKT LEIMFPSWPM  60
RFQHTCTPTI LPEQQGSSRS GEESTDDDSG SAVNTTTVTT ADQNQHKRSA PPASSSSDHF  120
QQHHQMEISA AVNDKRKVTP LEKSLDAKAQ RRLAQNREAA RKSRLRKKAY VQQLESSRMK  180
LAQLEQELHR ARQQGVFIGA ASGNLSSAAA MFDAEYGRWV EEDLRQMSEL RSALHSQLPD  240
SELREVVERY ICHYDEIFRL KGATAKSDVF HLITGMWCTS AERCFLWMGG FRPSDLIKML  300
ISQLDPLTEQ QVMGIYSLQH STQQAEEALT QGLEQLQHSL VDTIAAPADW MQQMAIALGK  360
VSNLQSFLRQ ADNLRQQTIH HLRRILTARQ AARCFLVIGE YYRRLRALSS LWASRPREVM  420
SEEKSCQMIT SDVQMAQLPP PQHAHFASF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10043387

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609047.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	1e-167	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8I048	0.0	A0A1U8I048_GOSHI; transcription factor TGA2-like
STRING	Lus10043387	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-160	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10043387

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]