PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10020434g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 239aa    MW: 26312.3 Da    PI: 6.0164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10020434g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-174695255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+Wv+eIr p     +  +r++lg++ tae Aa+a++aa ++l+g
  MA_10020434g0010 46 QYRGVRMRR-WGSWVSEIRAP-----HqkTRIWLGSYTTAEAAARAYDAALLCLKG 95
                      69****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3045105IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1946105IPR016177DNA-binding domain
PfamPF008472.5E-104695IPR001471AP2/ERF domain
CDDcd000185.29E-1846105No hitNo description
SMARTSM003807.8E-3246109IPR001471AP2/ERF domain
PROSITE profilePS5103221.94446103IPR001471AP2/ERF domain
PRINTSPR003672.8E-94758IPR001471AP2/ERF domain
PRINTSPR003672.8E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVCRSKESEC RQNVLIGSQQ HPERRECQVS SKAGKKSSRG SGQPRQYRGV RMRRWGSWVS  60
EIRAPHQKTR IWLGSYTTAE AAARAYDAAL LCLKGSSAAF NFPESATIIQ LPQSCQPPLM  120
SPRSIQKVAA AAAYGSPSAA TDLAGSNGVH CGAHNLQDSI LKTEIGAETM VNTTNNNDDA  180
DLTQEISWLE SPSRVDYAYD HQMLCCALLS SDLTPLSDWV DESYGQDDYE DLSNLWNFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14453RQYRGVRMRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1188491e-100FJ118849.1 Pinus taeda isolate 5484 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188501e-100FJ118850.1 Pinus taeda isolate 5492 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188511e-100FJ118851.1 Pinus taeda isolate 5488 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188521e-100FJ118852.1 Pinus taeda isolate 5490 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188531e-100FJ118853.1 Pinus taeda isolate 5477 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188541e-100FJ118854.1 Pinus taeda isolate 5485 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188551e-100FJ118855.1 Pinus taeda isolate 5493 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188571e-100FJ118857.1 Pinus taeda isolate 5483 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188601e-100FJ118860.1 Pinus taeda isolate 5481 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188611e-100FJ118861.1 Pinus taeda isolate 5482 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188621e-100FJ118862.1 Pinus taeda isolate 5487 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188631e-100FJ118863.1 Pinus taeda isolate 5489 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188651e-100FJ118865.1 Pinus taeda isolate 5479 anonymous locus UMN_971_01 genomic sequence.
GenBankJQ2644081e-100JQ264408.1 Pinus radiata isolate 5494 hypothetical protein (UMN_971_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB2CSN56e-36B2CSN5_TAXCU; Transcription factor AP2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-25ERF family protein