PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_1005g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 189aa MW: 22057.2 Da PI: 8.4654

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_1005g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.2	4.3e-16	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k +t+eq+++Le ++ ++++p +r++L +++ +++ +q+kvWFqN+R ++k+ MA_1005g0010 18 KYVHYTSEQVKALECVYSECPKPISLQRQQLIRECpiiyNIEPKQIKVWFQNQRCRKKQ 76 56789***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-16	6	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.621	13	77	IPR001356	Homeobox domain
SMART	SM00389	1.7E-9	15	81	IPR001356	Homeobox domain
CDD	cd00086	9.73E-11	18	78	No hit	No description
SuperFamily	SSF46689	2.74E-13	18	81	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-13	18	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAVMANNKDT KNSMDTSKYV HYTSEQVKAL ECVYSECPKP ISLQRQQLIR ECPIIYNIEP 60 KQIKVWFQNQ RCRKKQRKEA SRIQTINRKL TAMNNLLMEE NDFLQKQVSQ LVYENGYMRQ 120 QLQNTFVAAT DTRCESVVTS DQHQHNPTPQ HPPRDASPIG LLFIVEETLE EFIAPVEAKF 180 IYSSRVPSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	RCRKKQR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ391914	0.0	HQ391914.1 Picea glauca class III homeodomain leucine zipper protein (HB3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846777.1	4e-85	homeobox-leucine zipper protein HOX32
Swissprot	A2XK30	4e-78	HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	4e-78	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	E7DX24	1e-100	E7DX24_PICGL; Class III homeodomain leucine zipper protein
STRING	ERN08358	2e-84	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP19155	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32880.1	3e-70	homeobox gene 8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]