PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10118834g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 127aa    MW: 14324 Da    PI: 6.8041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10118834g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-081242448
                      HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                      W++Ia +++ gRt++++k++w+++l
  MA_10118834g0010  1 WSLIAGRLP-GRTDNEIKNYWNSHL 24
                      *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-7130IPR009057Homeodomain-like
CDDcd001677.13E-7124No hitNo description
Gene3DG3DSA:1.10.10.603.5E-12125IPR009057Homeodomain-like
PROSITE profilePS5129417.29128IPR017930Myb domain
PfamPF002492.1E-6124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
WSLIAGRLPG RTDNEIKNYW NSHLKRKLMS MGVDPLIHRP FQKNSRLLPS PPGTVREPQT  60
ARSHDVLQDF FRYPSELSAE SEQISDATSG LAQDEHLELN VHLNLNLELS ISRSSIHAAA  120
KEDVVNS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1188431e-179BT118843.1 Picea glauca clone GQ04010_O20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292755.12e-24transcription factor MYB8-like
TrEMBLA9NTK02e-54A9NTK0_PICSI; Uncharacterized protein
STRINGPOPTR_0010s12420.12e-22(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-22myb domain protein 4