PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10136614g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 254aa    MW: 28462.4 Da    PI: 5.7743
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10136614g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1326.5e-411250120374
              GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                       ++G+QWp+L++aL  R+++  +lRiT+++ ++++         +tg+rL+++A++ g+pf+f+     +l+ l  e L  +++E ++Vn++ q
  MA_10136614g0010   1 MEGMQWPPLMEAL--RNNDVGHLRITAIKWADEEeeeCLLYSGHTGRRLSEYASSAGIPFSFQET---DLKGL-KEILPSQEKEIVIVNCIWQ 87 
                       58*********98..678888*******9987774344455679*******************94...56666.46689999*********** PP

              GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                       l ++l  ++  +s+  e+L   ++l+P  v+++     ++ ++++Fle f++ le   ++fdslea+lp++  +r++vEr ++g++ ++ v+ 
  MA_10136614g0010  88 LPHML--NLRNKSQLLEFLVGARHLNPVAVTLATGShgIESGTANFLESFVRRLEELCTIFDSLEAGLPEHGLARAMVERIFIGPAMSKRVMS 178
                       *****..777777889****************986633777999************************************************9 PP

              GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrve.eesgslvlgWkdrpLvsvSaWr 374
                         +e +    + ++  +   ++G+ + ++s+++++ ak+ l   +s g y+ve   ++ lvl W + pLv+vS+W+
  MA_10136614g0010 179 HSQEDT----RESNVLDLPLNCGYDECSISSNNMNYAKHNLLCSSSTGsYQVElVGHHRLVLKWASTPLVWVSSWK 250
                       999922....23344567789*****************98877776666****6669999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.4421228IPR005202Transcription factor GRAS
PfamPF035142.2E-381250IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEGMQWPPLM EALRNNDVGH LRITAIKWAD EEEEECLLYS GHTGRRLSEY ASSAGIPFSF  60
QETDLKGLKE ILPSQEKEIV IVNCIWQLPH MLNLRNKSQL LEFLVGARHL NPVAVTLATG  120
SHGIESGTAN FLESFVRRLE ELCTIFDSLE AGLPEHGLAR AMVERIFIGP AMSKRVMSHS  180
QEDTRESNVL DLPLNCGYDE CSISSNNMNY AKHNLLCSSS TGSYQVELVG HHRLVLKWAS  240
TPLVWVSSWK SPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-111250119375GRAS family transcription factor containing protein, expressed
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2442921e-60KP244292.2 Pinus radiata SCL16 (SCL16) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-33GRAS family protein