PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10163039g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 235aa MW: 27365.3 Da PI: 6.5635

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10163039g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.5	8.1e-53	62	166	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ d MA_10163039g0010 62 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLD 154 89***99888999************************************************************************** PP NF-YC 91 flvdivprdelk 102 fl+divprde+k MA_10163039g0010 155 FLLDIVPRDEVK 166 *******875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.51E-31	48	156	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.0E-36	78	147	IPR009072	Histone-fold
Pfam	PF00808	7.1E-21	84	147	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEGKYPHLQS SPSPSVSHGP SSLMHNSIFQ QQQPQMPMQH HQQQLQGSMQ PHLHYMQIQK 60 QQLQMFWQQQ MQEMEQIAEF KQHQLPLARI KKIMKSDEDV KMISAEAPVL FSKACELFIL 120 ELTLRSWLHT EENKRRTLQR NDIAGAISRG DVLDFLLDIV PRDEVKDEEY GGHWPGIPHA 180 ESMSYGGIHF PLMHAQPYHH NLNPDVMTAQ QTMSQQLMSQ QPLMPDQQLM YQPPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-50	70	162	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085083	0.0	EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369382.1	7e-77	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9FMV5	2e-60	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A9NUT0	1e-170	A9NUT0_PICSI; Uncharacterized protein
STRING	PP1S315_9V6.3	3e-76	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	3e-53	nuclear factor Y, subunit C4

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]