PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_101817g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 255aa    MW: 27947.5 Da    PI: 6.6959
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_101817g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56e-4071081101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf +++ +k+fa+vhk+FGasnv+kll+++p  er +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+ael
  MA_101817g0010   7 PCGACKFLRRKCVKGCVFAPYFDSDEgAKNFAAVHKIFGASNVSKLLQHIPIPERCEAVVTISYEAQARLRDPVYGCVAHIFALQQQVASLQAEL 101
                     7*********************998879******************************************************************* PP

          DUF260  95 allkeel 101
                       ++++l
  MA_101817g0010 102 TFVQAQL 108
                     *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6316108IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSGGAPCGA CKFLRRKCVK GCVFAPYFDS DEGAKNFAAV HKIFGASNVS KLLQHIPIPE  60
RCEAVVTISY EAQARLRDPV YGCVAHIFAL QQQVASLQAE LTFVQAQLAS RVASGSASTS  120
MNFPVMSSSS YNQHPHQFPA QISPPCHPIP QPHNALLSRI KEENACGFAN SMDSEFSEPP  180
RDNSSPQMKI LQRCRYREEN GGEDGGDLQA LAHALLLRDS LPYGYDDCQA GDEFEGSSVD  240
GFVKRLWIER GSQFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3741288131LOB family transfactor Ramosa2.1
5ly0_B7e-3741288131LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1228010.0BT122801.1 Picea sitchensis clone WS0461_G07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D31e-157D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S157_25V6.12e-56(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-56LOB domain-containing protein 20