PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10190951g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 146aa    MW: 17314.9 Da    PI: 11.1077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10190951g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48e-142875148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT +Ed +l++++ + G g+W   a+  g++Rt+k+c++rw +yl
  MA_10190951g0010 28 KGPWTVQEDMQLIRYISLQGEGRWPYLAKAAGLKRTGKSCRLRWINYL 75
                      79********************************************97 PP
2Myb_DNA-binding51.22.9e-1681124146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + T+eE+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  MA_10190951g0010  81 RSKITPEEERLIIKLHGRWGNR-WSRIAQNLP-GRTDNEIKNYWRT 124
                       6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0552375IPR017930Myb domain
SuperFamilySSF466891.91E-2926122IPR009057Homeodomain-like
SMARTSM007172.5E-112777IPR001005SANT/Myb domain
PfamPF002493.0E-122875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-222982IPR009057Homeodomain-like
CDDcd001671.47E-73075No hitNo description
PROSITE profilePS5129425.4576130IPR017930Myb domain
SMARTSM007175.9E-1580128IPR001005SANT/Myb domain
PfamPF002498.7E-1582124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2483130IPR009057Homeodomain-like
CDDcd001671.60E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLWSANFMAL RNWWEFSAVE HEQPQTRKGP WTVQEDMQLI RYISLQGEGR WPYLAKAAGL  60
KRTGKSCRLR WINYLRPDLK RSKITPEEER LIIKLHGRWG NRWSRIAQNL PGRTDNEIKN  120
YWRTRIKKRL NLQAETGSSG MDAGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-282413023128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483815.19e-56PREDICTED: myb-related protein 305-like
RefseqXP_016672801.19e-56PREDICTED: myb-related protein 305-like
SwissprotP813913e-54MYB05_ANTMA; Myb-related protein 305
SwissprotQ2QZJ82e-53JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A222UAN36e-59A0A222UAN3_GINBI; R2R3MYB29
STRINGGorai.006G030800.13e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-54myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  3. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  4. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  5. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  6. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]