PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_102199g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 525aa MW: 59694.6 Da PI: 6.6921

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_102199g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.8e-16	144	188	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+++++da k++G W+ I +++g ++++ q++s+ qk+ MA_102199g0010 144 RERWTEDEHKKFLDALKLYGRS-WRHIEEHIG-TKSAVQIRSHAQKF 188 78****************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-15	138	194	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.89	139	193	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-8	141	190	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-15	142	191	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-12	143	191	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-13	144	187	IPR001005	SANT/Myb domain
CDD	cd00167	2.33E-9	146	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MLPLGSRFFS PSFPAQQISL KVTYIGAGWN FCNRDGGELE ETIPTHCVQL YTEDKPSQEI 60 ERKSKTYDKA DQDLTISAVR TFAVSCSVRG DVIETRYELI VYHHFDTGCF ETFKYWRIEE 120 GETHFSIDEP FSKVRKPYTI TKQRERWTED EHKKFLDALK LYGRSWRHIE EHIGTKSAVQ 180 IRSHAQKFFT KLEKGASTGT SSTMTYQYLE IPPPRPKRKP GHPYPKKTGV IDRGGDFSIL 240 EEDSRTRGCK VSERECSKLT ELAQHNSKSR SLDKPKMTQG TSQPSRMSTS LKLFGQTLVV 300 QNSFTDDFLF TSVENEAICS EIYPENKDAP CEDEILDCRR IRKDTFSPEE SETDTFQSVN 360 NSTGKSTIHK SSVFSNTNWS PALLNSCHSS SSENENIQCS YPQVLRDGSL EDGLQQKPEV 420 PDIKCKYTHQ SQQEDEKQRN KDKIGLEAQP GNIVLQSNPK PTPLMEGCSF KMASASQSNY 480 ADPLKEEYKI RGKNRTYSGA GFVPYKGCQK DGQYPGESDA EECNL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MLPLGSRFFS PSFPAQQISL KVTYIGAGWN FCNRDGGELE ETIPTHCVQL YTEDKPSQEI  60
ERKSKTYDKA DQDLTISAVR TFAVSCSVRG DVIETRYELI VYHHFDTGCF ETFKYWRIEE  120
GETHFSIDEP FSKVRKPYTI TKQRERWTED EHKKFLDALK LYGRSWRHIE EHIGTKSAVQ  180
IRSHAQKFFT KLEKGASTGT SSTMTYQYLE IPPPRPKRKP GHPYPKKTGV IDRGGDFSIL  240
EEDSRTRGCK VSERECSKLT ELAQHNSKSR SLDKPKMTQG TSQPSRMSTS LKLFGQTLVV  300
QNSFTDDFLF TSVENEAICS EIYPENKDAP CEDEILDCRR IRKDTFSPEE SETDTFQSVN  360
NSTGKSTIHK SSVFSNTNWS PALLNSCHSS SSENENIQCS YPQVLRDGSL EDGLQQKPEV  420
PDIKCKYTHQ SQQEDEKQRN KDKIGLEAQP GNIVLQSNPK PTPLMEGCSF KMASASQSNY  480
ADPLKEEYKI RGKNRTYSGA GFVPYKGCQK DGQYPGESDA EECNL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085534	0.0	EF085534.1 Picea sitchensis clone WS02728_K17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NW27	0.0	A9NW27_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1255	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	3e-32	MYB_related family protein