PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10226206g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YB

Protein Properties

Length: 190aa MW: 21140.9 Da PI: 7.7334

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10226206g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.9	8e-55	35	130	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdr+lPianv+rimkk+lP+nakisk+ake++qecvsefisfvt+easdkc++ekrktingdd+lwa++tlGfe y+eplk+yl +yre+e MA_10226206g0010 35 REQDRLLPIANVGRIMKKTLPNNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKIYLDRYREVE 127 89******************************************************************************************* PP NF-YB 95 gek 97 gek MA_10226206g0010 128 GEK 130 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-54	30	146	IPR009072	Histone-fold
SuperFamily	SSF47113	9.47E-41	37	145	IPR009072	Histone-fold
Pfam	PF00808	3.2E-28	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.4E-20	68	86	No hit	No description
PROSITE pattern	PS00685	0	71	87	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.4E-20	87	105	No hit	No description
PRINTS	PR00615	1.4E-20	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGDHSGGESS PHSDIESTGL HKTNNGSSSS QSVIREQDRL LPIANVGRIM KKTLPNNAKI 60 SKEAKEIMQE CVSEFISFVT GEASDKCHKE KRKTINGDDI LWAMTTLGFE VYAEPLKIYL 120 DRYREVEGEK LSLSKQLQAD QPQSEQHPAY NPAHNRPLVM TYKMPLPMPM HAKAPSPTDP 180 AATGHGRRPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-48	34	125	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-48	34	125	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ141079	1e-128	FJ141079.1 Pinus taeda isolate 7368 anonymous locus CL4270Contig1_06 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396797.1	1e-60	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024396798.1	1e-60	nuclear transcription factor Y subunit B-3-like
Swissprot	Q9FGJ3	8e-57	NFYB2_ARATH; Nuclear transcription factor Y subunit B-2
TrEMBL	H9MDE7	9e-68	H9MDE7_PINRA; Uncharacterized protein (Fragment)
TrEMBL	H9VDK5	9e-68	H9VDK5_PINTA; Uncharacterized protein (Fragment)
STRING	PP1S83_179V6.2	5e-60	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	3e-59	nuclear factor Y, subunit B2

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Xu F, et al. DELLA proteins physically interact with CONSTANS to regulate flowering under long days in Arabidopsis. FEBS Lett., 2016. 590(4): p. 541-9 [PMID:26801684] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]