PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10234279g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 219aa    MW: 24620.5 Da    PI: 7.2328
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10234279g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.61.4e-1030731957
                      HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      F++   +p  +e+++++++l    ++ e++V++WFqNr+ + k+
  MA_10234279g0010 30 FNSgLVNPPIDEIKRITTQLqefgEVGEANVFYWFQNRKSRTKQ 73
                      6666789**********************************996 PP
2Wus_type_Homeobox71.41.4e-2330752065
  Wus_type_Homeobox 20 yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++sGl++P+ +ei+rit++L+e+G+++++NVfyWFQNrk+R +q+q
   MA_10234279g0010 30 FNSGLVNPPIDEIKRITTQLQEFGEVGEANVFYWFQNRKSRTKQRQ 75
                       9*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000464.1E-83073IPR001356Homeobox domain
SuperFamilySSF466898.32E-83679IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-54279IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKVRHYKETK GVRLDQSHGG IQNQSRFESF NSGLVNPPID EIKRITTQLQ EFGEVGEANV  60
FYWFQNRKSR TKQRQRQIQA EERAKSSAVR TTMNVGNNTT ANSLHNNGES SSAAVPAASF  120
YTHQDHCYHR VQVNEEMNID QSSYMQAPGN ESNKDSIYGP SITVFINEIP VELPVGPINL  180
KAVFGENAIL LHSSGQPVLV NEWGYTLQGL LQGAMYYLI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119500.0JX411950.1 Picea abies WUSCHEL homeobox protein WOX8A (WOX8A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8331e-136R9R833_PICAB; WUSCHEL homeobox protein WOX8A
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP46971222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.15e-28WUSCHEL related homeobox 11