PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10249055g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 245aa    MW: 28113.8 Da    PI: 7.5486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10249055g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-121663248
                      SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +WTt Ed +l d+++ +G +  W++   + g++R++k+c++rw +yl
  MA_10249055g0010 16 AAWTTKEDMILRDYINIHGLEgGWRSLRDKTGLNRSGKSCRLRWMNYL 63
                      68*****************8899***********************97 PP
2Myb_DNA-binding54.43e-1769114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  MA_10249055g0010  69 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.4611063IPR017930Myb domain
SuperFamilySSF466891.8E-2514110IPR009057Homeodomain-like
SMARTSM007173.1E-91465IPR001005SANT/Myb domain
PfamPF002491.4E-101663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-191770IPR009057Homeodomain-like
CDDcd001674.24E-71763No hitNo description
PROSITE profilePS5129426.65464118IPR017930Myb domain
SMARTSM007173.3E-1668116IPR001005SANT/Myb domain
PfamPF002493.2E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2571118IPR009057Homeodomain-like
CDDcd001671.29E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRSRRCSRD EGFNRAAWTT KEDMILRDYI NIHGLEGGWR SLRDKTGLNR SGKSCRLRWM  60
NYLRPNIKRG NISTDEEELI IRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTHLRKKIGA  120
LYKRDQIEAK MTEEDRDVSP GFDLVGANAK KIAVNIETNV NDAQSFDEQS RTLLQEDLTM  180
EICSHPHPNM TSLMLEDEEL IFKQNGITSE GVLGDLHSKF VFDMSFSALD TVESDVAVSC  240
PKPRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-211311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186080.0BT118608.1 Picea glauca clone GQ04008_C16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-58B8LMJ6_PICSI; Uncharacterized protein
TrEMBLF8TJT02e-59F8TJT0_PINRE; MYB-like protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-45MYB family protein