PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10255g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 557aa MW: 63009.1 Da PI: 8.4089

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10255g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	399.4	3.8e-122	194	556	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ecAe v + ++a+++++ ls++as +gd+++Rl+a ft+AL+ r + a pp + + ++ e +a+ +++v+P+++f+hl MA_10255g0010 194 LRNLLTECAEYVGQCAWQRADRMISILSTRASTRGDSTERLVAQFTQALKIRSDL-----AIARPPPQPAGATEREIESAYLCLNQVTPFIRFAHL 284 689********************************************988654.....44456666666778888899999********* PP GRAS 97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 taNqaIlea++++ +H++D++i+qG+QWp+++qaLa+Rp+gpp ++R+Tg g ++e+l++tg+rL++fA++lg++fefn+ + + +d++ MA_10255g0010 285 TANQAILEALDTDsPSIHVVDINIMQGVQWPPFMQALAERPAGPPgHIRLTGAGT----DAEALRRTGRRLERFAHTLGLRFEFNPWILD--DDIS 374 *******99899*********************88888*****....9**********************7554..4455 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +++++pgE+la+n+vl+lh+llde ++ + +++L ++sl+Pkvv ++e+eadhn++ F++rf+eal++ysalf+slea+lp+ s+er vE MA_10255g0010 375 SLAISTRPGESLAINCVLHLHELLDEAHNEK--LKSFLVRIRSLEPKVVALAEREADHNRPGFADRFAEALNHYSALFESLEATLPPRSQERLDVE 468 55778888************6655544..59********************************************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++++grei+n+va eg r erh+++e+W e ++e+GF++++lse+a +qa+lllr ++ s+gy++++++++++lgW++ pL+svS+W MA_10255g0010 469 QVWFGREITNIVALEGHGRSERHQRFERWTEIMNECGFTSLSLSEFALSQARLLLRLHYpSEGYQLHSRNNAAFLGWQNTPLFSVSSW 556 ************************************************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.795	168	536	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-119	194	556	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MRPKPNTQGR NQQKKHRQLG VVAGGLGFCV HIIPVRLRSF AIKDCVRARR WPGWRPARKS 60 EPRVVVSRKG STAEGSRLDN FERDLGNLDY TGAAGYLAGS QIMSPRKRIV KARQQPEHQQ 120 QQQQKKKLEH YRQENKKGRS FYNIFCDSLQ LYAAASSFNE MLGSSDSHDE EEESERPEQT 180 GVMDTGTESG AAHLRNLLTE CAEYVGQCAW QRADRMISIL STRASTRGDS TERLVAQFTQ 240 ALKIRSDLAI ARPPPQPAGA TEREIESAYL CLNQVTPFIR FAHLTANQAI LEALDTDSPS 300 IHVVDINIMQ GVQWPPFMQA LAERPAGPPG HIRLTGAGTD AEALRRTGRR LERFAHTLGL 360 RFEFNPWILD DDISSLAIST RPGESLAINC VLHLHELLDE AHNEKLKSFL VRIRSLEPKV 420 VALAEREADH NRPGFADRFA EALNHYSALF ESLEATLPPR SQERLDVEQV WFGREITNIV 480 ALEGHGRSER HQRFERWTEI MNECGFTSLS LSEFALSQAR LLLRLHYPSE GYQLHSRNNA 540 AFLGWQNTPL FSVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MRPKPNTQGR NQQKKHRQLG VVAGGLGFCV HIIPVRLRSF AIKDCVRARR WPGWRPARKS  60
EPRVVVSRKG STAEGSRLDN FERDLGNLDY TGAAGYLAGS QIMSPRKRIV KARQQPEHQQ  120
QQQQKKKLEH YRQENKKGRS FYNIFCDSLQ LYAAASSFNE MLGSSDSHDE EEESERPEQT  180
GVMDTGTESG AAHLRNLLTE CAEYVGQCAW QRADRMISIL STRASTRGDS TERLVAQFTQ  240
ALKIRSDLAI ARPPPQPAGA TEREIESAYL CLNQVTPFIR FAHLTANQAI LEALDTDSPS  300
IHVVDINIMQ GVQWPPFMQA LAERPAGPPG HIRLTGAGTD AEALRRTGRR LERFAHTLGL  360
RFEFNPWILD DDISSLAIST RPGESLAINC VLHLHELLDE AHNEKLKSFL VRIRSLEPKV  420
VALAEREADH NRPGFADRFA EALNHYSALF ESLEATLPPR SQERLDVEQV WFGREITNIV  480
ALEGHGRSER HQRFERWTEI MNECGFTSLS LSEFALSQAR LLLRLHYPSE GYQLHSRNNA  540
AFLGWQNTPL FSVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-70	200	556	25	378	Protein SCARECROW
5b3h_A	2e-70	200	556	24	377	Protein SCARECROW
5b3h_D	2e-70	200	556	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251525.1	1e-145	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-107	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1J6ISA0	1e-144	A0A1J6ISA0_NICAT; Scarecrow-like protein 18
STRING	XP_009765072.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5491	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-109	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]