PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10260690g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 117aa    MW: 13273.7 Da    PI: 4.3319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10260690g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-0970107342
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                        ++++E++l+ ++ ++lG + W++Ia +++ gRt +++  
  MA_10260690g0010  70 GFSEDEEDLISRLYNLLGQR-WALIAGRIP-GRTTEEIEK 107
                       69*****************9.*********.****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-567115IPR001005SANT/Myb domain
PfamPF002492.4E-869108IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-670108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1071108IPR009057Homeodomain-like
CDDcd001674.08E-771109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEHPAPIMAH KLNEVESKIR TVLPAGIGGF FFNSHFLNSQ GTMSDTDCLS SEDNVSMDSP  60
DDVNEDYKMG FSEDEEDLIS RLYNLLGQRW ALIAGRIPGR TTEEIEKYCS RRYGSEY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1033331e-156BT103333.1 Picea glauca clone GQ0228_A02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086360.11e-24MYB-like transcription factor ETC1
TrEMBLB8LRL31e-35B8LRL3_PICSI; Uncharacterized protein
STRINGXP_002529738.12e-23(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.17e-17MYB_related family protein