PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10266929g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 167aa MW: 18397 Da PI: 10.1816

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10266929g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92	5.1e-29	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+ l+Wtp+LH++Fvea++qLGG+++ tPk ++++m+v+gLt++hvk HLQkYR+ MA_10266929g0010 48 KQWLHWTPDLHDQFVEAISQLGGADRVTPKGVRKMMGVQGLTIYHVKIHLQKYRI 102 56799*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.99E-16	46	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-26	46	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-21	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-8	53	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-11	134	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MFQNKKFSTD GLVPQRFHGS EQRGAGPLGV TSSSSGSLVT SGGSGSTKQW LHWTPDLHDQ 60 FVEAISQLGG ADRVTPKGVR KMMGVQGLTI YHVKIHLQKY RIAKYIPESL EGGKSGKKKG 120 NKIVSNLEAI SGTQIVEALQ MQMEVQKRLH EQLEVQHYYS IYIASAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT108056	1e-165	BT108056.1 Picea glauca clone GQ03116_F08 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360639.1	3e-56	protein PHOSPHATE STARVATION RESPONSE 1-like
Swissprot	Q9SJW0	6e-46	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2K1KZM9	7e-55	A0A2K1KZM9_PHYPA; Uncharacterized protein
STRING	PP1S226_24V6.1	1e-55	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-43	G2-like family protein